Mir-71-P10

MirGeneDB ID

Lpo-Mir-71-P10

Family name

MIR-71 (all species)

Seed

CUCACUA

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666453.1: 400160-400219 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UAUAGAAAAACGAGAGAAGCAUUUUUCCUGUGAAAGACAUGGGUAGUGAGAUGUGAUUAAGGCAACCAUCUCACUACCUUGUCUUUGACGGAAAGGGUGAUAAGAACUUCGUGGUAACAA

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Structure

        10          20        30        40        50          
UAUAGAAAAACGAGAGAAG--|      C    G       U             UGAUUA 
                     CAUUUUU CUGU AAAGACA GGGUAGUGAGAUG      \
                     GUGGGAA GGCA UUUCUGU UCCAUCACUCUAC      A
AACAAUGGUGCUUCAAGAAUA^      A    G       -             CAACGG 
.       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-71-P10_5p*

mirBase accession

None

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

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Mature sequence

Lpo-Mir-71-P10_3p

mirBase accession

None

Sequence

38- UCUCACUACCUUGUCUUUGACG -60

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