MirGeneDB ID | Npo-Mir-71 |
---|---|
Family name | MIR-71 (all species) |
Seed | GAAAGAC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | |
Orthologues | Aae-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cgi-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Esc-Mir-71 Hme-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Obi-Mir-71 Ovu-Mir-71 Pfl-Mir-71 Pmi-Mir-71 Sko-Mir-71 Sme-Mir-71-P16a Sme-Mir-71-P16b Sme-Mir-71-P17 Sme-Mir-71-P18 Sme-Mir-71-P19 Spu-Mir-71 Tca-Mir-71 |
Node of Origin (locus) | Bilateria |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409153-409211 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | AGUUUCUGCUGUGGACUGAUGUGUGCUGCUUGAAAGACACGGGUAGUGAGAUGGUAAUGUCAACGCGUCUUACUACCCUGUCUUUUCCGCUGAACACUUCACAGCUGCUGUACCGACAUGet precursor sequence |
Structure | 10 20 30 40 50 AGUUUCUGCUGUGGACU--| U GCU UU C GUAAU GA GUGU GC GAAAGACA GGGUAGUGAGAUG G CU CACA CG UUUUCUGU CCCAUCAUUCUGC U UACAGCCAUGUCGUCGACA^ U AGU CC - GCAAC 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Mature sequence | Npo-Mir-71_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGAAAGACACGGGUAGUGAGAUG -23
Get sequence
|
Star sequence | Npo-Mir-71_3p* (predicted) |
mirBase accession | None |
Sequence |
37- UCUUACUACCCUGUCUUUUCCG -59
Get sequence
|