Mir-71-o7

MirGeneDB ID

Gsa-Mir-71-o7

Family name

MIR-71 (all species)

Seed

GAAAGAC

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-71a

Paralogues

Gsa-Mir-71-o8

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

G. salaris

Node of Origin (family)

Nephrozoa

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006951238: 7887-7948 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-71-o7)

Mir-71-o7 scf7180006951238: 7887-7948 [+] UCSC Ensembl
Mir-2-o161a scf7180006951238: 8098-8159 [+] UCSC Ensembl
Mir-2-o161b scf7180006951238: 8098-8159 [+] UCSC Ensembl
Mir-2-o162 scf7180006951238: 8224-8285 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAUCGGCCCAUAUGAUCCCGAUGAUAGUGUGAAAGACUUGCGUAGUGAGACGCUCUAAAUGUGCAUAGCGUCUUCUAUCAAGACUUUCGUACCAUCGUUCGUCCGUACGUCUUUUCAGAGA

Get precursor sequence

Structure

        10         20         30        40        50        60 
UCAUCGGCCCAUAUGAUCC-  -|    A         A    C    U        CUAAA 
                    CG AUGAU GUGUGAAAG CUUG GUAG GAGACGCU     U
                    GC UGCUA CAUGCUUUC GAAC UAUC UUCUGCGA     G
AGAGACUUUUCUGCAUGCCU  U^    C         A    -    -        UACGU 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gsa-Mir-71-o7_5p

mirBase accession

MIMAT0035246

Sequence

0- UGAAAGACUUGCGUAGUGAGACGCU -25

Get sequence

Star sequence

Gsa-Mir-71-o7_3p*

mirBase accession

MIMAT0035247

Sequence

39- CGUCUUCUAUCAAGACUUUCGUA -62

Get sequence