MirGeneDB ID | Pmi-Mir-71 |
Family name |
MIR-71 (all species) |
Seed |
GAAAGAC |
Species |
Bat starfish (Patiria miniata) |
MiRBase ID |
pmi-mir-71
|
Paralogues |
|
Orthologues |
Aae-Mir-71
Asu-Mir-71
Bfl-Mir-71
Bge-Mir-71
Bla-Mir-71
Cbr-Mir-71
Cel-Mir-71
Cgi-Mir-71
Csc-Mir-71-P14
Csc-Mir-71-P15
Cte-Mir-71
Dma-Mir-71
Dpu-Mir-71
Efe-Mir-71-P1
Efe-Mir-71-P2
Efe-Mir-71-P3
Esc-Mir-71
Hme-Mir-71
Isc-Mir-71
Lan-Mir-71-P4
Lan-Mir-71-P5
Lgi-Mir-71
Lpo-Mir-71-P7
Lpo-Mir-71-P8
Lpo-Mir-71-P9
Lpo-Mir-71-P10
Lpo-Mir-71-P11
Lpo-Mir-71-P12
Lpo-Mir-71-P13
Npo-Mir-71
Obi-Mir-71
Ovu-Mir-71
Pfl-Mir-71
Sko-Mir-71
Sme-Mir-71-P16a
Sme-Mir-71-P16b
Sme-Mir-71-P17
Sme-Mir-71-P18
Sme-Mir-71-P19
Spu-Mir-71
Tca-Mir-71
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Pmin1) |
JH784216.1: 18589-18651 [+]
|
Precursor (pre-Mir +30nt flank) |
GCUGGUGCUGGCUUGAUGCAGUGUACUGUGUGAAAGACAUGGGUAGUGAGAUUGUGACAUCUCAAGACUAUCCCGCUACCUUGUCUCUCAUCACAGCGUGCUGGCUCUUACAACGGGGGACAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUGGUGCUGGCUUGAUG-- UA -| A U A UGUGACAU
CAGUG CUGUG UGA AGACA GGGUAGUG GAU \
GUCGU GACAC ACU UCUGU UCCAUCGC CUA C
AACAGGGGGCAACAUUCUCG GC U^ C - C UCAGAACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pmi-Mir-71_5p |
mirBase accession | MIMAT0032150 |
Sequence |
0- UGAAAGACAUGGGUAGUGAGAU -22
Get sequence
|
Star sequence |
Pmi-Mir-71_3p* |
mirBase accession | None |
Sequence |
41- CCCGCUACCUUGUCUCUCAUCA -63
Get sequence
|