MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-71-o3

Family name MIR-71 (all species)
Seed GAAAGAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-71c
Paralogues Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o4 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000006_dd_Smes_g4_6: 2195478-2195544 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-o3)		 Mir-71-o3 NNSW01000006_dd_Smes_g4_6: 2195478-2195544 [+] UCSC Ensembl
Mir-2-o126 NNSW01000006_dd_Smes_g4_6: 2195588-2195642 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUUUAGAAAGUUUAUGUUGUAGUUUUCUUGAAAGACAUGGGUAGUGAGAUUAUUUAAAUUAAAUAUUUAAAAUCUCAUUAUUCAAGUUUUUCUUAUAAGCUACUAUUUAUCGUCAUUAUUUCUUU
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Structure
        10        20          30        40        50        60   
AUGUUUAGAAAGUUUAUGUU--|      UCUU       A             UAUUUAAAUU 
                      GUAGUUU    GAAAGAC UGGGUAGUGAGAU          \
                      CAUCGAA    CUUUUUG ACUUAUUACUCUA          A
UUUCUUUAUUACUGCUAUUUAU^      UAUU       A             AAAUUUAUAA 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-71-o3_5p
mirBase accessionMIMAT0003987
Sequence 
0- UGAAAGACAUGGGUAGUGAGAU -22
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Star sequence

Sme-Mir-71-o3_3p*
mirBase accessionMIMAT0012107
Sequence 
45- CUCAUUAUUCAAGUUUUUCUUA -67
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