MirGeneDB ID | Dma-Mir-71 |
Family name |
MIR-71 (all species) |
Seed |
GAAAGAC |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-71
Asu-Mir-71
Bfl-Mir-71
Bge-Mir-71
Bla-Mir-71
Cbr-Mir-71
Cel-Mir-71
Cgi-Mir-71
Csc-Mir-71-P14
Csc-Mir-71-P15
Cte-Mir-71
Dpu-Mir-71
Efe-Mir-71-P1
Efe-Mir-71-P2
Efe-Mir-71-P3
Esc-Mir-71
Hme-Mir-71
Isc-Mir-71
Lan-Mir-71-P4
Lan-Mir-71-P5
Lgi-Mir-71
Lpo-Mir-71-P7
Lpo-Mir-71-P8
Lpo-Mir-71-P9
Lpo-Mir-71-P10
Lpo-Mir-71-P11
Lpo-Mir-71-P12
Lpo-Mir-71-P13
Npo-Mir-71
Obi-Mir-71
Ovu-Mir-71
Pfl-Mir-71
Pmi-Mir-71
Sko-Mir-71
Sme-Mir-71-P16a
Sme-Mir-71-P16b
Sme-Mir-71-P17
Sme-Mir-71-P18
Sme-Mir-71-P19
Spu-Mir-71
Tca-Mir-71
|
Node of Origin (locus) |
Bilateria
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Node of Origin (family) |
Bilateria
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Genome context (DMA_ASM399081) |
NC_046175.1: 11973451-11973516 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUGCCGCGCAAUCCGUGAAAGGCAUCGGCGUGAAAGACAUGGGUAGUGAGAUGUUGGCGUGGUAGUUCCACACCUCUCACUACUUUGUCGUUCACGUUGCGCACUUUCCUGUUUCUUCGCUGUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGCCGCGCAAUCCGUG-- -| AU A U U UGGCGUGG
AAAG GC CGGCGUGAA GACA GGGUAGUGAGA GU \
UUUC CG GUUGCACUU CUGU UUCAUCACUCU CA U
UUUUGUCGCUUCUUUGUCC A^ C- G - C CACCUUGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
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Mature sequence |
Dma-Mir-71_5p |
mirBase accession | None |
Sequence |
0- UGAAAGACAUGGGUAGUGAGAUGU -24
Get sequence
|
Co-mature sequence |
Dma-Mir-71_3p |
mirBase accession | None |
Sequence |
43- CUCUCACUACUUUGUCGUUCACG -66
Get sequence
|