MirGeneDB 3.0
MirGeneDB ID

Pcr-Mir-71-v1

Family name MIR-71 (all species)
Seed GAAAGAC
Species Tiger flatworm (Prostheceraeus crozieri )
MiRBase ID
Paralogues Pcr-Mir-71-v2 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)		 CAJQUW010002633.1: 635983-636044 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUUUUGAUUAGAUUACGAACUUGCUAAUGAAAGACAUGGGUAGUGAGAUGAGUAAUUCUUCUGUGCAUCUUCCUACCCUGUCUUUCGAAAGCCAGCUCGUCGGUCGUCUAUCAUCAUAC
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Structure
        10          20        30        40        50        60 
AUUUUUUUGAUUAGAUU--|   A  U   AA         U      UG     AGUAAUU 
                   ACGA CU GCU  UGAAAGACA GGGUAG  AGAUG       \
                   UGCU GA CGA  GCUUUCUGU CCCAUC  UCUAC       C
CAUACUACUAUCUGCUGGC^   C  C   AA         -      CU     GUGUCUU 
120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut -1 on the 3p arm
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pcr-Mir-71-v1_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Star sequence

Pcr-Mir-71-v1_3p*
mirBase accessionNone
Sequence 
40- UCUUCCUACCCUGUCUUUCGAA -62
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