Mir-71

MirGeneDB ID

Rph-Mir-71

Family name

MIR-71 (all species)

Seed

GAAAGAC

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Ava-Mir-71-P20 Ava-Mir-71-P21 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Csc-Mir-71-P14 Csc-Mir-71-P15 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Efe-Mir-71-P2 Efe-Mir-71-P3 Egr-Mir-71 Esc-Mir-71 Gsa-Mir-71-o7 Gsa-Mir-71-o8 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lan-Mir-71-P5 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Lpo-Mir-71-P7 Lpo-Mir-71-P8 Lpo-Mir-71-P9 Lpo-Mir-71-P10 Lpo-Mir-71-P11 Lpo-Mir-71-P12 Lpo-Mir-71-P13 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pcr-Mir-71-v1 Pcr-Mir-71-v2 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Sko-Mir-71 Sma-Mir-71-o5 Sma-Mir-71-o6 Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 Tur-Mir-71-P6a Tur-Mir-71-P6b War-Mir-71

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Ruditapes_GCA_009026015)

CM018536.1: 47739342-47739400 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUGUUUAUUAAAGAUCCUUAUUUAUGCUGUGAAAGACAUGGGUAGUGAGAUGUUUGUAGUUUAUCACCUUGCUAACCUGUCUUUUGCAGUGUUGUAGGGCCAGCUUCUAUUUGUAUAG

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Structure

        10           20        30        40        50         
GAUGUUUAUUAAAGAUC---|    UU      UG       U  G   UG  A  UUUGU 
                    CUUAU  AUGCUG  AAAGACA GG UAG  AG UG     A
                    GGAUG  UGUGAC  UUUCUGU CC AUC  UC AC     G
GAUAUGUUUAUCUUCGACCG^    U-      GU       -  A   GU  C  UAUUU 
       110       100         90        80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-71_5p

mirBase accession

None

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

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Star sequence

Rph-Mir-71_3p*

mirBase accession

None

Sequence

37- CCUUGCUAACCUGUCUUUUGCA -59

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