MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-71-o5

Family name MIR-71 (all species)
Seed GAAAGAC
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-71a
Paralogues Sma-Mir-71-o6 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(GCA_000237925.5_SM_V9_genomic)		 OU426849.1: 4543971-4544024 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-o5)		 Mir-71-o5 OU426849.1: 4543971-4544024 [+] UCSC Ensembl
Mir-2-o130 OU426849.1: 4544063-4544117 [+] UCSC Ensembl
Mir-2-o131 OU426849.1: 4544155-4544212 [+] UCSC Ensembl
Mir-2-o132 OU426849.1: 4544251-4544316 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUCAUGUGAAGAUGUGAUACUAGUGCUGUGAAAGACGAUGGUAGUGAGAUGCCGAUUGCAUCUCGCUUCCCCGCCUUUCCCGGUAAGAAUCACGAGUCGUCUGCAAUACCUC
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Structure
        10            20        30        40        50       
UGUUCAUGUGAAGAUGU----|  A  AG     U     A  AU  U         CCG 
                     GAU CU  UGCUG GAAAG CG  GG AGUGAGAUG   \
                     CUA GA  AUGGC CUUUC GC  CC UCGCUCUAC   A
CUCCAUAACGUCUGCUGAGCA^  A  --     C     C  C-  U         GUU 
  110       100        90          80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
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Mature sequence

Sma-Mir-71-o5_5p
mirBase accessionMIMAT0010181
Sequence 
0- UGAAAGACGAUGGUAGUGAGAUG -23
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Star sequence

Sma-Mir-71-o5_3p*
mirBase accessionMIMAT0032103
Sequence 
32- UCUCGCUUCCCCGCCUUUCCCG -54
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