MirGeneDB 3.0
MirGeneDB ID

Cte-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-71
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pcr-Mir-71-v2  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_933: 9934-9996 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-71 CAPTEscaffold_933: 9934-9996 [+] Ensembl
Mir-2-o13 CAPTEscaffold_933: 10046-10112 [+] Ensembl
Mir-2-P12 CAPTEscaffold_933: 10173-10226 [+] Ensembl
Mir-2-o14 CAPTEscaffold_933: 10412-10472 [+] Ensembl
Mir-2-o15 CAPTEscaffold_933: 10541-10616 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGGUUUCAGACAAUACAGAGGAGCUCCAUGAAAGACAUGGGUAGUGAGAUGUACACUGUCUCUAAUCACCUUGCUAUCAUGUCUUUCCAUGGAGAACUCUUAUCGAUAGUCGUUUGGCUUC
Get precursor sequence
Structure
        10           20        30         40        50        60 
UGUGGUUUCAGACAAUAC---|   GAG       -          G   UG  A  UACACUG 
                     AGAG   CUCCAUG AAAGACAUGG UAG  AG UG       \
                     UCUC   GAGGUAC UUUCUGUACU AUC  UC AC       U
CUUCGGUUUGCUGAUAGCUAU^   AA-       C          -   GU  C  UAAUCUC 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Ea Fe Fe La La Ma Ma To
Mature sequence

Cte-Mir-71_5p
mirBase accessionMIMAT0009517
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
Get sequence
Star sequence

Cte-Mir-71_3p*
mirBase accessionNone
Sequence 
40- CCUUGCUAUCAUGUCUUUCCAUG -63
Get sequence