MirGeneDB 3.0

MirGeneDB ID

Cte-Mir-2-P12

Family name MIR-2 (all species)
Seed AUCACAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-2g
Paralogues Cte-Mir-2-o13  Cte-Mir-2-o14  Cte-Mir-2-o15  Cte-Mir-2-o16  Cte-Mir-2-o17  Cte-Mir-2-o18  Cte-Mir-2-o19 
Orthologues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Efe-Mir-2-P12g  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lgi-Mir-2-P12a  Lgi-Mir-2-P12b  Lgi-Mir-2-P12c  Lgi-Mir-2-P12d  Lgi-Mir-2-P12e  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_933: 10173-10226 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2-P12)
Mir-71 CAPTEscaffold_933: 9934-9996 [+] Ensembl
Mir-2-o13 CAPTEscaffold_933: 10046-10112 [+] Ensembl
Mir-2-P12 CAPTEscaffold_933: 10173-10226 [+] Ensembl
Mir-2-o14 CAPTEscaffold_933: 10412-10472 [+] Ensembl
Mir-2-o15 CAPTEscaffold_933: 10541-10616 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACCACCCCCUCCUGUGCAUGGCUCACCGCGGUCUCAGCGUCUGUGGUGCGCUGAAUUCGUAUCACAGACCGCUUGGAUCACAGUGCGCUGUUGUGAUGGUUACACUCGUGGU
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Structure
        10          20        30        40         50      
UCACCACCCCCUCCUGU-  -     U   CGC     C   -|           CUG 
                  GC AUGGC CAC   GGUCU AGC GUCUGUGGUGCG   \
                  UG UGUCG GUG   CUAGG UCG CAGACACUAUGC   A
UGGUGCUCACAUUGGUAG  U     C   ACA     U   C^           UUA 
  110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-2-P12_5p*

mirBase accessionNone
Sequence
0- CGGUCUCAGCGUCUGUGGUGCG -22
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Mature sequence

Cte-Mir-2-P12_3p

mirBase accessionMIMAT0013559
Sequence
31- UAUCACAGACCGCUUGGAUCACA -54
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