Mir-2-P12g

MirGeneDB ID

Efe-Mir-2-P12g

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-2-o20 Efe-Mir-2-o21 Efe-Mir-2-o22 Efe-Mir-2-o23 Efe-Mir-2-o24 Efe-Mir-2-P12f

Orthologues

Cte-Mir-2-P12 Dgr-Mir-2-P12 Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12g Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

E. fetida

Node of Origin (family)

Protostomia

Genome context
(Efe_combined)

Efet.01.155957: 2068-2132 [+]

Precursor
(pre-Mir +30nt flank)

UGGUUACAUUCCAAAAUUCUGUUGAUGCGACAGUCCAGGUGGUUGAGAUGCGUUUCUUUUUGAAAAUGGUCGUAUCACAGCCUGCUUGGAUUAUGGCAGCAAUAGACAAGCAGCACAGCUUCUAA

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Structure

        10          20        30        40         50        60 
UGGUUACAUUCCAAAAU--       A   GAC         -|    A      UUUCUUUU 
                   UCUGUUG UGC   AGUCCAGGU GGUUG GAUGCG        U
                   AGAUAAC ACG   UUAGGUUCG CCGAC CUAUGC        G
AAUCUUCGACACGACGAAC       G   GUA         U^    A      UGGUAAAA 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Efe-Mir-2-P12g_5p*

mirBase accession

None

Sequence

0- CAGUCCAGGUGGUUGAGAUGCG -22

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Mature sequence

Efe-Mir-2-P12g_3p

mirBase accession

None

Sequence

42- UAUCACAGCCUGCUUGGAUUAUG -65

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