Mir-2-P12

MirGeneDB ID

Ovu-Mir-2-P12

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Common octopus (Octopus vulgaris)

MiRBase ID

Paralogues

Ovu-Mir-2-o45-v1 Ovu-Mir-2-o45-v2 Ovu-Mir-2-o46-v1 Ovu-Mir-2-o46-v2 Ovu-Mir-2-o47a Ovu-Mir-2-o47b Ovu-Mir-2-o47c Ovu-Mir-2-o47d Ovu-Mir-2-o48-v1 Ovu-Mir-2-o48-v2 Ovu-Mir-2-o49

Orthologues

Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Efe-Mir-2-P12g Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Protostomia

Genome context
(GCA_003957725.1_ASM395772v1_OVU)

RXHP01057295.1: 23087-23152 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUUAUUGUUUUGUCUGCCAUGUCUAUUACUGACCAAGUGGUUGUGAAUGUGCUGCUAAAUUGGAUUUUCAUAUCACAGCCUGCUUGGAUCAGUAAUAUACUUGGUGCUCCAACACCUUGGGAUU

Get precursor sequence

Structure

        10          20        30         40         50        60  
UUUUUAUUGUUUUGUCU--    U  C         -      -|       A    CUGCUAAA 
                   GCCA GU UAUUACUGA CCAAGU GGUUGUGA UGUG        \
                   UGGU CA AUAAUGACU GGUUCG CCGACACU AUAC        U
UUAGGGUUCCACAACCUCG    U  U         A      U^       -    UUUUAGGU 
    120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov

Star sequence

Ovu-Mir-2-P12_5p*

mirBase accession

None

Sequence

0- CUGACCAAGUGGUUGUGAAUGUG -23

Get sequence

Mature sequence

Ovu-Mir-2-P12_3p

mirBase accession

None

Sequence

42- UAUCACAGCCUGCUUGGAUCAGUA -66

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