MirGeneDB ID | Ovu-Mir-2-o47b |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Mir-2-o45-v1
Ovu-Mir-2-o45-v2
Ovu-Mir-2-o46-v1
Ovu-Mir-2-o46-v2
Ovu-Mir-2-o47a
Ovu-Mir-2-o47c
Ovu-Mir-2-o47d
Ovu-Mir-2-o48-v1
Ovu-Mir-2-o48-v2
Ovu-Mir-2-o49
Ovu-Mir-2-P12
|
Orthologues |
Esc-Mir-2-o47b
Gsp-Mir-2
Npo-Mir-2-o47
Obi-Mir-2-o47b
Ple-Mir-2
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Protostomia
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01057295.1: 22396-22455 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUCUGCGUGUAUCUAUUGACCAUGUUGUAUCUCAUCAAAUAACUGGGAUAUGCGGUUAUAAUGACGUAUCACAGCUAGCUUUGAUGAGCUUCAACUUGGUUGUUCUCAGCAACCUGGUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUGCGUGUAUCUAUU-- U UAU --| A G CGGUU
GACCA GUUG CUCAUCAAA UA CUG GAUAUG A
UUGGU CAAC GAGUAGUUU AU GAC CUAUGC U
AUUGGUCCAACGACUCUUG U UUC CG^ C A AGUAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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Star sequence |
Ovu-Mir-2-o47b_5p* |
mirBase accession | None |
Sequence |
0- CUCAUCAAAUAACUGGGAUAUG -22
Get sequence
|
Mature sequence |
Ovu-Mir-2-o47b_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCUAGCUUUGAUGAGCU -60
Get sequence
|