MirGeneDB ID | Npo-Mir-2-o47 |
---|---|
Family name | MIR-2 (all species) |
Seed | CACAGCC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-2-o45 Npo-Mir-2-o48a Npo-Mir-2-o48b Npo-Mir-2-o49 Npo-Mir-2-P12 |
Orthologues | Esc-Mir-2-o47a-v1 Esc-Mir-2-o47a-v2 Esc-Mir-2-o47b Esc-Mir-2-o47c Esc-Mir-2-o47d Gsp-Mir-2 Obi-Mir-2-o47a Obi-Mir-2-o47b Obi-Mir-2-o47c Obi-Mir-2-o47d Ovu-Mir-2-o47a Ovu-Mir-2-o47b Ovu-Mir-2-o47c Ovu-Mir-2-o47d Ple-Mir-2 |
Node of Origin (locus) | Cephalopoda |
Node of Origin (family) | Protostomia |
Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409822-409878 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | GAGGCUGGGGAUUCAUUCGCCUCGCUGCAGAUCGUCAAGGUGGUUGUGACGUGUUGAGCCUCAUAUCACAGCCAGCUUUGAUGAGCUGGAGUGGUGUUGCAAACUGCAUUCUCUUUGGet precursor sequence |
Structure | 10 20 30 40 50 GAGGCUGGGGAUUCAUU----| UC G A - CG GUUG CGCC GCU CAG UCGUCAAGG UGGUUGUGA U A GUGG UGA GUC AGUAGUUUC ACCGACACU A G GUUUCUCUUACGUCAAACGUU^ -- G G G AU CUCC 110 100 90 80 70 60 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-2-o47_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AUCGUCAAGGUGGUUGUGACGUG -23
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|
Mature sequence | Npo-Mir-2-o47_3p (predicted) |
mirBase accession | None |
Sequence |
35- UCACAGCCAGCUUUGAUGAGCU -57
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|