MirGeneDB ID | Obi-Mir-2-o47a |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-2-o45-v1
Obi-Mir-2-o45-v2
Obi-Mir-2-o46-v1
Obi-Mir-2-o46-v2
Obi-Mir-2-o47b
Obi-Mir-2-o47c
Obi-Mir-2-o47d
Obi-Mir-2-o48-v1
Obi-Mir-2-o48-v2
Obi-Mir-2-o49
Obi-Mir-2-P12
|
Orthologues |
Esc-Mir-2-o47a-v1
Esc-Mir-2-o47a-v2
Gsp-Mir-2
Npo-Mir-2-o47
Ovu-Mir-2-o47a
Ple-Mir-2
|
Node of Origin (locus) |
Octopus
|
Node of Origin (family) |
Protostomia
|
Genome context (PRJNA270931_OBI) |
KQ419829: 50806-50865 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUAUCCUUAGUGUUGUGACUGUGUUGUAUCUCAUCAAAGAGCUGGGAUAUGCUAACAAAAUGACGUAUCACAGCUAGCUUUGAUGAGCUAGGGCACUGUUGAAAGCAUCACAAAUCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUAUCCUUAGUGUUGU-- U G U --| G CUAAC
GAC GUGUU UA CUCAUCAAAG AGCUG GAUAUG A
UUG CACGG AU GAGUAGUUUC UCGAC CUAUGC A
CACCUAAACACUACGAAAG U G C GA^ A AGUAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Obi-Mir-2-o47a_5p* |
mirBase accession | None |
Sequence |
0- CUCAUCAAAGAGCUGGGAUAUG -22
Get sequence
|
Mature sequence |
Obi-Mir-2-o47a_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCUAGCUUUGAUGAGCU -60
Get sequence
|