MirGeneDB 3.0
MirGeneDB ID

Obi-Mir-2-o49

Family name MIR-2 (all species)
Seed CAUCAAA
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues Obi-Mir-2-o45-v1  Obi-Mir-2-o45-v2  Obi-Mir-2-o46-v1  Obi-Mir-2-o46-v2  Obi-Mir-2-o47a  Obi-Mir-2-o47b  Obi-Mir-2-o47c  Obi-Mir-2-o47d  Obi-Mir-2-o48-v1  Obi-Mir-2-o48-v2  Obi-Mir-2-P12 
Orthologues Esc-Mir-2-o49  Gsp-Mir-2  Npo-Mir-2-o49  Ovu-Mir-2-o49  Ple-Mir-2 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Protostomia
Genome context
(PRJNA270931_OBI)		 KQ419829: 49553-49612 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGACCAUACAGCGAUGGCUGGGAUCUCCUUUCAUCAAAGUGGCUGUCAUAUGCUUUCCAAUCCUUCAUAUCACAGCCUGCUUUGAUGAGAGGAAGCCCUUCACUGCAAAUUCAGAUGCCA
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Structure
        10           20        30        40         50         
AGACCAUACAGCGAUGGCU---|  AUC               -      C     CUUUCC 
                      GGG   UCCUUUCAUCAAAGU GGCUGU AUAUG      \
                      CCC   AGGAGAGUAGUUUCG CCGACA UAUAC      A
ACCGUAGACUUAAACGUCACUU^  GA-               U      C     UUCCUA 
.       110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Obi-Mir-2-o49_5p
mirBase accessionNone
Sequence 
0- UCAUCAAAGUGGCUGUCAUAUG -22
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Co-mature sequence

Obi-Mir-2-o49_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCUGCUUUGAUGAGA -60
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