MirGeneDB 3.0
MirGeneDB ID

Esc-Mir-2-o49

Family name MIR-2 (all species)
Seed CAUCAAA
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Mir-2-o45-v1  Esc-Mir-2-o45-v2  Esc-Mir-2-o47a-v1  Esc-Mir-2-o47a-v2  Esc-Mir-2-o47b  Esc-Mir-2-o47c  Esc-Mir-2-o47d  Esc-Mir-2-o48-v1  Esc-Mir-2-o48-v2  Esc-Mir-2-P12 
Orthologues Gsp-Mir-2  Npo-Mir-2-o49  Obi-Mir-2-o49  Ovu-Mir-2-o49  Ple-Mir-2 
Node of Origin (locus) Cephalopoda
Node of Origin (family) Protostomia
Genome context
(GCA_004765925.1_miRNA_LOCI)		 Esc-Mir-2-o24_pre_SRIE01000454.1:384633-384896: 101-164 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACUCGGCCUACAAUGGCUAGCAUCUCCUUUCAUCAAAGUGGCUGUCAUACGUUACCCUUAAUCUCAUUCGUAUCACAGCCUGCUUUGAUGAGAGGAAGCCCUUCACUACAAACCUCCACGAUG
Get precursor sequence
Structure
        10        20            30        40         50        60 
GACUCGGCCUACAAUGGCUA----| AUC               -      C     UUACCCUU 
                        GC   UCCUUUCAUCAAAGU GGCUGU AUACG        \
                        CG   AGGAGAGUAGUUUCG CCGACA UAUGC        A
GUAGCACCUCCAAACAUCACUUCC^ A--               U      C     UUACUCUA 
  120       110       100          90        80        70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Li
Mature sequence

Esc-Mir-2-o49_5p
mirBase accessionNone
Sequence 
0- UCAUCAAAGUGGCUGUCAUACG -22
Get sequence
Star sequence

Esc-Mir-2-o49_3p*
mirBase accessionNone
Sequence 
41- UAUCACAGCCUGCUUUGAUGAGA -64
Get sequence