Mir-2-P12

MirGeneDB ID

Esc-Mir-2-P12

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Hawaiian bobtail squid (Euprymna scolopes)

MiRBase ID

Paralogues

Esc-Mir-2-o45-v1 Esc-Mir-2-o45-v2 Esc-Mir-2-o47a-v1 Esc-Mir-2-o47a-v2 Esc-Mir-2-o47b Esc-Mir-2-o47c Esc-Mir-2-o47d Esc-Mir-2-o48-v1 Esc-Mir-2-o48-v2 Esc-Mir-2-o49

Orthologues

Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Efe-Mir-2-P12g Gsp-Mir-2 Hru-Mir-2-P12 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Protostomia

Genome context
(GCA_004765925.1_miRNA_LOCI)

Esc-Mir-2-o21_pre_SRIE01000454.1:381988-382249: 101-162 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAUACACAAUAUCAUCUGCCAUGUCUUUUACUGACCAAGUGGCUGCGACAUGUUAAACAUUCUCUUCAUAUCACAGCCUGCUUGGAUCAGUAUGAGGCUUUCUGGUAUCACAUCCUGAGCCC

Get precursor sequence

Structure

        10        20          30         40         50         
AAUACACAAUAUCAUCUGCCAU--     U      -      -|    C  C   UUAAAC 
                        GUCUU UACUGA CCAAGU GGCUG GA AUG      A
                        CGGAG AUGACU GGUUCG CCGAC CU UAC      U
CCCGAGUCCUACACUAUGGUCUUU     U      A      U^    A  A   UUCUCU 
120       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Li

Star sequence

Esc-Mir-2-P12_5p*

mirBase accession

None

Sequence

0- CUGACCAAGUGGCUGCGACAUG -22

Get sequence

Mature sequence

Esc-Mir-2-P12_3p

mirBase accession

None

Sequence

38- UAUCACAGCCUGCUUGGAUCAGUA -62

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