MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-2-P12

Family name MIR-2 (all species)
Seed AUCACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-2-o63  Rph-Mir-2-o64  Rph-Mir-2-o65  Rph-Mir-2-o66  Rph-Mir-2-o67  Rph-Mir-2-o68  Rph-Mir-2-o69  Rph-Mir-2-o70  Rph-Mir-2-o71  Rph-Mir-2-o72  Rph-Mir-2-o73 
Orthologues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Cte-Mir-2-P12  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Efe-Mir-2-P12g  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lgi-Mir-2-P12a  Lgi-Mir-2-P12b  Lgi-Mir-2-P12c  Lgi-Mir-2-P12d  Lgi-Mir-2-P12e  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 CM018536.1: 47739104-47739161 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACUGAGGAAAAGAAAGAAAAGUCCUGCUACUGGCCAAGUGGUUGUUAUAUAUUGAUUUCCCUAUAUCACAGCCUGCUUGGAUCAGUAGUAUGAUCGUAUUUUACACCAAUCACAGUA
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Structure
        10        20          30         40         50       
AACUGAGGAAAAGAAAGAAAA--   C         -      -|     U     UUGA 
                       GUC UGCUACUGG CCAAGU GGUUGU AUAUA    U
                       UAG AUGAUGACU GGUUCG CCGACA UAUAU    U
AUGACACUAACCACAUUUUAUGC   U         A      U^     C     CCCU 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-2-P12_5p*
mirBase accessionNone
Sequence 
0- CUGGCCAAGUGGUUGUUAUAUA -22
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Mature sequence

Rph-Mir-2-P12_3p
mirBase accessionNone
Sequence 
34- UAUCACAGCCUGCUUGGAUCAGUA -58
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