Mir-2-P12

MirGeneDB ID

Rph-Mir-2-P12

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-2-o63 Rph-Mir-2-o64 Rph-Mir-2-o65 Rph-Mir-2-o66 Rph-Mir-2-o67 Rph-Mir-2-o68 Rph-Mir-2-o69 Rph-Mir-2-o70 Rph-Mir-2-o71 Rph-Mir-2-o72 Rph-Mir-2-o73

Orthologues

Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Efe-Mir-2-P12g Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Protostomia

Genome context
(Ruditapes_GCA_009026015)

CM018536.1: 47739104-47739161 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AACUGAGGAAAAGAAAGAAAAGUCCUGCUACUGGCCAAGUGGUUGUUAUAUAUUGAUUUCCCUAUAUCACAGCCUGCUUGGAUCAGUAGUAUGAUCGUAUUUUACACCAAUCACAGUA

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Structure

        10        20          30         40         50       
AACUGAGGAAAAGAAAGAAAA--   C         -      -|     U     UUGA 
                       GUC UGCUACUGG CCAAGU GGUUGU AUAUA    U
                       UAG AUGAUGACU GGUUCG CCGACA UAUAU    U
AUGACACUAACCACAUUUUAUGC   U         A      U^     C     CCCU 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Star sequence

Rph-Mir-2-P12_5p*

mirBase accession

None

Sequence

0- CUGGCCAAGUGGUUGUUAUAUA -22

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Mature sequence

Rph-Mir-2-P12_3p

mirBase accession

None

Sequence

34- UAUCACAGCCUGCUUGGAUCAGUA -58

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