MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-2-o72

Family name MIR-2 (all species)
Seed AUCACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-2-o63  Rph-Mir-2-o64  Rph-Mir-2-o65  Rph-Mir-2-o66  Rph-Mir-2-o67  Rph-Mir-2-o68  Rph-Mir-2-o69  Rph-Mir-2-o70  Rph-Mir-2-o71  Rph-Mir-2-o73  Rph-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 QUSP01001813.1: 155017-155075 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCAAGAAGUGGAAUUGGUCUUUAUUUAGGCCAUCAAAGUGGUUGUUGAUGUGUUGCAUUUACCAUAUCACAGCCUGCUUUGAUGAGCUUAGUAUAGGCAGUAAACAAGCAGCACCUGG
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Structure
        10           20        30         40         50        
CUCAAGAAGUGGAAUUG---    U  U      -         -|     U      UUGC 
                    GUCU UA UUAGGC CAUCAAAGU GGUUGU GAUGUG    A
                    CGGA AU GAUUCG GUAGUUUCG CCGACA CUAUAC    U
GGUCCACGACGAACAAAUGA    U  -      A         U^     -      CAUU 
       110       100         90        80        70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-2-o72_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCAUCAAAGUGGUUGUUGAUGUG -23
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Mature sequence

Rph-Mir-2-o72_3p
mirBase accessionNone
Sequence 
35- UAUCACAGCCUGCUUUGAUGAGCU -59
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