MirGeneDB ID | Rph-Mir-2-o66 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
Rph-Mir-2-o63
Rph-Mir-2-o64
Rph-Mir-2-o65
Rph-Mir-2-o67
Rph-Mir-2-o68
Rph-Mir-2-o69
Rph-Mir-2-o70
Rph-Mir-2-o71
Rph-Mir-2-o72
Rph-Mir-2-o73
Rph-Mir-2-P12
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
R. philippinarum
|
Node of Origin (family) |
Protostomia
|
Genome context (Ruditapes_GCA_009026015) |
CM018536.1: 47737950-47738006 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCAGUGGACAGAAAUUGGGAUAAGUGUUGGCGUCAAAGUGUCUGUGAAAUGUAAAUUAGGUCAUAUCACAGCCAGCUUUGAUGACAGCAAUAUUCUCAGAUCCUUCAUGACAACCU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGCAGUGGACAGAAAUU-- UAAG G GU-| A UAAA
GGGA UGUUG CGUCAAAGU CUGUGA AUG U
CUCU ACGAC GUAGUUUCG GACACU UAC U
UCCAACAGUACUUCCUAGA UAUA A ACC^ A UGGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Rph-Mir-2-o66_5p* |
mirBase accession | None |
Sequence |
0- GCGUCAAAGUGUCUGUGAAAUG -22
Get sequence
|
Mature sequence |
Rph-Mir-2-o66_3p |
mirBase accession | None |
Sequence |
34- UAUCACAGCCAGCUUUGAUGACA -57
Get sequence
|