MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-2-o63

Family name MIR-2 (all species)
Seed AUCACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-2-o64  Rph-Mir-2-o65  Rph-Mir-2-o66  Rph-Mir-2-o67  Rph-Mir-2-o68  Rph-Mir-2-o69  Rph-Mir-2-o70  Rph-Mir-2-o71  Rph-Mir-2-o72  Rph-Mir-2-o73  Rph-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 CM018536.1: 47738775-47738832 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAACGCCAGUUGAAUUUGAUUGUUAAAGCCAUCAAAAUGACUGUGAUAUGUUGUAAACAAUUCCUAUCACAGCCAGCUUUGAUGAGCUUUCAUAAUCUGUAACAUGCAGUCCUUUGU
Get precursor sequence
Structure
        10          20        30          40        50       
AUAACGCCAGUUGAAUUU--      U     -       A-| A        UGUUGUA 
                    GAUUGU AAAGC CAUCAAA  UG CUGUGAUA       A
                    CUAAUA UUUCG GUAGUUU  AC GACACUAU       A
UGUUUCCUGACGUACAAUGU      C     A       CG^ C        CCUUAAC 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-2-o63_5p*
mirBase accessionNone
Sequence 
0- CAUCAAAAUGACUGUGAUAUG -21
Get sequence
Mature sequence

Rph-Mir-2-o63_3p
mirBase accessionNone
Sequence 
35- UAUCACAGCCAGCUUUGAUGAGC -58
Get sequence