| MirGeneDB ID | Rph-Mir-2-o63 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Mir-2-o64
Rph-Mir-2-o65
Rph-Mir-2-o66
Rph-Mir-2-o67
Rph-Mir-2-o68
Rph-Mir-2-o69
Rph-Mir-2-o70
Rph-Mir-2-o71
Rph-Mir-2-o72
Rph-Mir-2-o73
Rph-Mir-2-P12
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
R. philippinarum
|
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| Node of Origin (family) |
Protostomia
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Genome context
(Ruditapes_GCA_009026015) |
CM018536.1: 47738775-47738832 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUAACGCCAGUUGAAUUUGAUUGUUAAAGCCAUCAAAAUGACUGUGAUAUGUUGUAAACAAUUCCUAUCACAGCCAGCUUUGAUGAGCUUUCAUAAUCUGUAACAUGCAGUCCUUUGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUAACGCCAGUUGAAUUU-- U - A-| A UGUUGUA
GAUUGU AAAGC CAUCAAA UG CUGUGAUA A
CUAAUA UUUCG GUAGUUU AC GACACUAU A
UGUUUCCUGACGUACAAUGU C A CG^ C CCUUAAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Rph-Mir-2-o63_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAUCAAAAUGACUGUGAUAUG -21
Get sequence
|
|---|
| Mature sequence |
Rph-Mir-2-o63_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UAUCACAGCCAGCUUUGAUGAGC -58
Get sequence
|
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