MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-2-o65

Family name MIR-2 (all species)
Seed AUCACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-2-o63  Rph-Mir-2-o64  Rph-Mir-2-o66  Rph-Mir-2-o67  Rph-Mir-2-o68  Rph-Mir-2-o69  Rph-Mir-2-o70  Rph-Mir-2-o71  Rph-Mir-2-o72  Rph-Mir-2-o73  Rph-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 CM018536.1: 47738240-47738298 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGCAGUGGAGGGGAUACAUUGUCAACGAGGCAUCUAAGUGGCUUUGAUGUGUAGUGUUAUUAUCGUAUCACAGCCAGCUUUGAUGAGCUUGGGGCAAUCUGUUAGUCAGCAAUAAUAA
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Structure
        10          20        30          40        50        
CAGCAGUGGAGGGGAUAC--      AA    G-    U   -|    U       UAGUG 
                    AUUGUC  CGAG  CAUC AAG UGGCU UGAUGUG     U
                    UAACGG  GUUC  GUAG UUC ACCGA ACUAUGC     U
AAUAAUAACGACUGAUUGUC      G-    GA    U   G^    C       UAUUA 
       110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-2-o65_5p*
mirBase accessionNone
Sequence 
0- GCAUCUAAGUGGCUUUGAUGUG -22
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Mature sequence

Rph-Mir-2-o65_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCAGCUUUGAUGAGC -59
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