MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-2-P12

Family name MIR-2 (all species)
Seed AUCACAG
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues Lhy-Mir-2-o80  Lhy-Mir-2-o81  Lhy-Mir-2-o82  Lhy-Mir-2-o83  Lhy-Mir-2-o84 
Orthologues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Cte-Mir-2-P12  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Efe-Mir-2-P12g  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lgi-Mir-2-P12a  Lgi-Mir-2-P12b  Lgi-Mir-2-P12c  Lgi-Mir-2-P12d  Lgi-Mir-2-P12e  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Protostomia
Genome context
(Mono_atcgn_nospaces)
scaffold155753_41.9: 1702-1759 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCAGCAAUGUCUUUGCCGUCUACAUUGCUGGCCACGUGGCUGUGGUUUGUGAUUUUGCCACCAUAUCACAGCCUGCUUGGAUCAGUAAUGUAUGUUGGUACAACCGUCGGUUUGAA
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Structure
        10         20         30          40        50       
UUGCAGCAAUGUCUUUG-   UC-           -   C  -|        U  UGAUU 
                  CCG   UACAUUGCUGG CCA GU GGCUGUGGU UG     U
                  GGU   AUGUAAUGACU GGU CG CCGACACUA AC     U
AAGUUUGGCUGCCAACAU   UGU           A   U  U^        U  CACCG 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Lhy-Mir-2-P12_5p* (predicted)

mirBase accessionNone
Sequence
0- UGGCCACGUGGCUGUGGUUUG -21
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Mature sequence

Lhy-Mir-2-P12_3p

mirBase accessionNone
Sequence
35- UAUCACAGCCUGCUUGGAUCAGU -58
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