MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-2-o83

Family name MIR-2 (all species)
Seed AUCACAG
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues Lhy-Mir-2-P12  Lhy-Mir-2-o80  Lhy-Mir-2-o81  Lhy-Mir-2-o82  Lhy-Mir-2-o84 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. hyalina
Node of Origin (family) Protostomia
Genome context
(Mono_atcgn_nospaces)
scaffold155753_41.9: 1118-1176 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CACGACUUACAAACACUUCAAUUCCCUGAGUCAUCAAAGUGGUUAUGAUGUGCAGAUUAAGGAUCAUAUCACAGCCAUCUUUGAUGAGCUCAGUUGAUUGGUAACAUCGAGGUAAUGUU
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Structure
        10         20        30          40        50        
CACGACUUACAAACACU-      CC     -         -|    A       CAGAU 
                  UCAAUU  CUGAG UCAUCAAAG UGGUU UGAUGUG     U
                  GGUUAG  GACUC AGUAGUUUC ACCGA ACUAUAC     A
UUGUAAUGGAGCUACAAU      UU     G         U^    C       UAGGA 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Lhy-Mir-2-o83_5p* (predicted)

mirBase accessionNone
Sequence
0- UCAUCAAAGUGGUUAUGAUGUG -22
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Mature sequence

Lhy-Mir-2-o83_3p

mirBase accessionNone
Sequence
36- UAUCACAGCCAUCUUUGAUGAGC -59
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