MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-2-o81

Family name MIR-2 (all species)
Seed AUCACAG
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues Lhy-Mir-2-P12  Lhy-Mir-2-o80  Lhy-Mir-2-o82  Lhy-Mir-2-o83  Lhy-Mir-2-o84 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) L. hyalina
Node of Origin (family) Protostomia
Genome context
(Mono_atcgn_nospaces)
scaffold155753_41.9: 1524-1583 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGAAGCUUUGAAAAUCGUGCGUGCCCACGAUUGUCAAGGUGGCUGUUGAUGUGUUUAAAUUCUCAUAUCACAGCCUGCUUUGAUGAGCUUGGACAUACAUGAACACAGCAAUGCGAAAG
Get precursor sequence
Structure
        10          20        30        40         50         
CCGAAGCUUUGAAAAUC--   CG  C   CGA UG       -|     U      UUUA 
                   GUG  UG CCA   U  UCAAGGU GGCUGU GAUGUG    A
                   UAC  AC GGU   A  AGUUUCG CCGACA CUAUAC    A
GAAAGCGUAACGACACAAG   AU  A   UCG GU       U^     -      UCUU 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Lhy-Mir-2-o81_5p* (predicted)

mirBase accessionNone
Sequence
0- AUUGUCAAGGUGGCUGUUGAUGUG -24
Get sequence
Mature sequence

Lhy-Mir-2-o81_3p

mirBase accessionNone
Sequence
36- UAUCACAGCCUGCUUUGAUGAGCU -60
Get sequence