| MirGeneDB ID | Lhy-Mir-2-o80 |
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| Family name |
MIR-2 (all species) |
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| Seed |
CACAGCC |
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| Species |
Laevipilina (Monoplacophora) (Laevipilina hyalina) |
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| MiRBase ID |
|
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| Paralogues |
Lhy-Mir-2-P12
Lhy-Mir-2-o81
Lhy-Mir-2-o82
Lhy-Mir-2-o83
Lhy-Mir-2-o84
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
L. hyalina
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Mono_atcgn_nospaces) |
scaffold155753_41.9: 2057-2118 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCGCAGCCCACAAGACAUUGGGUGUCGUGGACCAUCAAUGCUGGGUGUAAUAGUCCGACGGUCGCUUCUAUCACAGCCAGCUUUGAUGAGCCAUGUUCGUCCAAGAACCGUCGACGAGCCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCGCAGCCCACAAGACA- GU U-| AC U G A GUCCGAC
UUGG G CGUGG CAUCAA GCUGG UGU AUA G
AACC C GUACC GUAGUU CGACC ACA UAU G
CUCCGAGCAGCUGCCAAG UG UU^ GA U G C CUUCGCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lhy-Mir-2-o80_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACCAUCAAUGCUGGGUGUAAUA -22
Get sequence
|
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| Mature sequence |
Lhy-Mir-2-o80_3p |
| mirBase accession | None |
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| Sequence |
40- UCACAGCCAGCUUUGAUGAGCC -62
Get sequence
|
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