MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-2-P12f

Family name MIR-2 (all species)
Seed AUCACAG
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-2-o20  Efe-Mir-2-o21  Efe-Mir-2-o22  Efe-Mir-2-o23  Efe-Mir-2-o24  Efe-Mir-2-P12g 
Orthologues Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Cte-Mir-2-P12  Dgr-Mir-2-P12  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.126385: 2777-2840 [+]
Precursor
(pre-Mir +30nt flank)
AGCCACGGAACGGUUUUUUGGGUCUUGUCAACAUUCAAGUGGCUGUUGUGCGUUCUCAGGUCCCAUAUUCGUAUCACAGCCAGCUUGGAUCAGGAUAAUUCCCUUCAAAAUUCCAACUGAGAAA
Get precursor sequence
Structure
        10          20        30         40        50        60 
AGCCACGGAACGGUUUUUU--   UC     AAC       -|      U     UUCUCAGG 
                     GGG  UUGUC   AUUCAAG UGGCUGU GUGCG        \
                     CCC  AAUAG   UAGGUUC ACCGACA UAUGC        U
AAAGAGUCAACCUUAAAACUU   UU     GAC       G^      C     UUAUACCC 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Efe-Mir-2-P12f_5p*
mirBase accessionNone
Sequence 
0- ACAUUCAAGUGGCUGUUGUGCG -22
Get sequence
Mature sequence

Efe-Mir-2-P12f_3p
mirBase accessionNone
Sequence 
41- UAUCACAGCCAGCUUGGAUCAGG -64
Get sequence