MirGeneDB ID | Efe-Mir-2-o24 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-2-o20
Efe-Mir-2-o21
Efe-Mir-2-o22
Efe-Mir-2-o23
Efe-Mir-2-P12f
Efe-Mir-2-P12g
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Protostomia
|
Genome context (Efe_combined) |
Efet.01.159362: 648-708 [-]
|
Precursor (pre-Mir +30nt flank) |
UGAAAAGAAUUUCCAGAAAUUCCUCAUGGCACGGCAAAGUUGCGGUGAUGUGUAUGAUUGUCAAGUCAUAUCACAGCCUGCUUUGACGAGCCAUACACCAAGCACAGCAGAGNNNNNNNNN
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAAAGAAUUUCCAGAAAUUCCUC-- A G U-| G UAUGAU
AUGGC CG CAAAGU GC GUGAUGUG U
UACCG GC GUUUCG CG CACUAUAC G
NNNNNNNNNGAGACGACACGAACCACA A A UC^ A UGAACU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Efe-Mir-2-o24_5p* |
mirBase accession | None |
Sequence |
0- ACGGCAAAGUUGCGGUGAUGUG -22
Get sequence
|
Mature sequence |
Efe-Mir-2-o24_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGCCUGCUUUGACGAGC -61
Get sequence
|