| MirGeneDB ID | Efe-Mir-2-o22 |
|---|---|
| Family name | MIR-2 (all species) |
| Seed | AUCACAG |
| Species | Common brandling worm (Eisenia fetida) |
| MiRBase ID | |
| Paralogues | Efe-Mir-2-o20 Efe-Mir-2-o21 Efe-Mir-2-o23 Efe-Mir-2-o24 Efe-Mir-2-P12f Efe-Mir-2-P12g |
| Orthologues | Gsp-Mir-2 Ple-Mir-2 |
| Node of Origin (locus) | E. fetida |
| Node of Origin (family) | Protostomia |
| Genome context (Efe_combined) |
Efet.01.1558418: 151-207 [-] |
| Precursor (pre-Mir +30nt flank) | UGGUGAAGGUGGUUGUGAUACGUUGCUUGGUGUCGUAUCACAGCCGCUUUGACUGGUGet precursor sequence |
| Structure | 10 20 U--| G UU UU GGU AAGGUGGUUGUGAUACG GC \ UCA UUUCGCCGACACUAUGC UG G UGG^ G -- UG 50 40 30 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Efe-Mir-2-o22_5p* |
| mirBase accession | None |
| Sequence |
0- UGGUGAAGGUGGUUGUGAUACG -22
Get sequence
|
| Mature sequence | Efe-Mir-2-o22_3p |
| mirBase accession | None |
| Sequence |
35- UAUCACAGCCGCUUUGACUGGU -57
Get sequence
|
