MirGeneDB ID | Pdu-Mir-2-P12 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-2-o25-v1
Pdu-Mir-2-o25-v2
Pdu-Mir-2-o26
Pdu-Mir-2-o27
Pdu-Mir-2-o28
Pdu-Mir-2-o29
Pdu-Mir-2-o30
Pdu-Mir-2-o31
Pdu-Mir-2-o32
Pdu-Mir-2-o33
Pdu-Mir-2-o34
Pdu-Mir-2-o35
|
Orthologues |
Agr-Mir-2-P12a
Agr-Mir-2-P12b
Agr-Mir-2-P12c
Agr-Mir-2-P12d
Agr-Mir-2-P12e
Agr-Mir-2-P12f1
Agr-Mir-2-P12f2
Cte-Mir-2-P12
Dgr-Mir-2-P12
Efe-Mir-2-P12f
Efe-Mir-2-P12g
Esc-Mir-2-P12
Gsp-Mir-2
Hru-Mir-2-P12
Lgi-Mir-2-P12a
Lgi-Mir-2-P12b
Lgi-Mir-2-P12c
Lgi-Mir-2-P12d
Lgi-Mir-2-P12e
Lhy-Mir-2-P12
Llo-Mir-2-P12
Mgi-Mir-2-P12
Mom-Mir-2-P12f
Mom-Mir-2-P12g
Mom-Mir-2-P12h
Mom-Mir-2-P12i
Mom-Mir-2-P12j
Mom-Mir-2-P12k
Npo-Mir-2-P12
Obi-Mir-2-P12
Ofu-Mir-2-P12
Ovu-Mir-2-P12
Pau-Mir-2-P12
Ple-Mir-2
Pve-Mir-2-P12
Rph-Mir-2-P12
War-Mir-2-P12
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000003.1: 67087096-67087160 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGGUGCUGAGAUGAUUACUAGUGUCGCUGCGGUCCAAGUGGUUGAGAUAGCUGUUUUCUCUAAACUGGGGUAUCACAGCCUUGCUUGGAUCAUAGCGACACUCAGAAAGACUGUGUCUCAGGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGGUGCUGAGAUGAUUA- - C --| A G UGUUUUCU
CU AGUGUCGCUG GGUCCAAGU GGUUG GAUA C \
GA UCACAGCGAU CUAGGUUCG CCGAC CUAU G C
GUGGACUCUGUGUCAGAAA C A UU^ A G GGUCAAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-2-P12_5p* |
mirBase accession | None |
Sequence |
0- CGGUCCAAGUGGUUGAGAUAGC -22
Get sequence
|
Mature sequence |
Pdu-Mir-2-P12_3p |
mirBase accession | None |
Sequence |
41- UAUCACAGCCUUGCUUGGAUCAUA -65
Get sequence
|