MirGeneDB 3.0

MirGeneDB ID

Pdu-Mir-2-P12

Family name MIR-2 (all species)
Seed AUCACAG
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-2-o25-v1  Pdu-Mir-2-o25-v2  Pdu-Mir-2-o26  Pdu-Mir-2-o27  Pdu-Mir-2-o28  Pdu-Mir-2-o29  Pdu-Mir-2-o30  Pdu-Mir-2-o31  Pdu-Mir-2-o32  Pdu-Mir-2-o33  Pdu-Mir-2-o34  Pdu-Mir-2-o35 
Orthologues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Cte-Mir-2-P12  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Efe-Mir-2-P12g  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lgi-Mir-2-P12a  Lgi-Mir-2-P12b  Lgi-Mir-2-P12c  Lgi-Mir-2-P12d  Lgi-Mir-2-P12e  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000003.1: 67087096-67087160 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUGCUGAGAUGAUUACUAGUGUCGCUGCGGUCCAAGUGGUUGAGAUAGCUGUUUUCUCUAAACUGGGGUAUCACAGCCUUGCUUGGAUCAUAGCGACACUCAGAAAGACUGUGUCUCAGGUG
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Structure
        10         20         30        40          50        60 
AUGGUGCUGAGAUGAUUA-  -          C         --|    A    G UGUUUUCU 
                   CU AGUGUCGCUG GGUCCAAGU  GGUUG GAUA C        \
                   GA UCACAGCGAU CUAGGUUCG  CCGAC CUAU G        C
GUGGACUCUGUGUCAGAAA  C          A         UU^    A    G GGUCAAAU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2-P12_5p*

mirBase accessionNone
Sequence
0- CGGUCCAAGUGGUUGAGAUAGC -22
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Mature sequence

Pdu-Mir-2-P12_3p

mirBase accessionNone
Sequence
41- UAUCACAGCCUUGCUUGGAUCAUA -65
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