MirGeneDB ID | Pdu-Mir-2-o33 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-2-o25-v1
Pdu-Mir-2-o25-v2
Pdu-Mir-2-o26
Pdu-Mir-2-o27
Pdu-Mir-2-o28
Pdu-Mir-2-o29
Pdu-Mir-2-o30
Pdu-Mir-2-o31
Pdu-Mir-2-o32
Pdu-Mir-2-o34
Pdu-Mir-2-o35
Pdu-Mir-2-P12
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
P. dumerilii
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000003.1: 66419072-66419128 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AAUUAUGAUCGAAUAUUGACCUUUGCAAGGCUGUUGGAUUUGUUGUGACUAUGUAUAAGGCAUCAUAUCACAGCCAAUUUGACAGCCUGGCUUUGGCUCAAAGCGUCACUGAUCUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUUAUGAUCGAAUAUU- -| UUU A UG U C UAUA
GA CC GC AGGCUGU GAUU GUUGUGA UAUG A
CU GG CG UCCGACA UUAA CGACACU AUAC G
AGUCUAGUCACUGCGAAA C^ UUU G GU C - UACG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-2-o33_5p* |
mirBase accession | None |
Sequence |
0- CUGUUGGAUUUGUUGUGACUAUG -23
Get sequence
|
Mature sequence |
Pdu-Mir-2-o33_3p |
mirBase accession | None |
Sequence |
35- UAUCACAGCCAAUUUGACAGCC -57
Get sequence
|