MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-2-o34

Family name MIR-2 (all species)
Seed AUCACAG
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-2-o25-v1  Pdu-Mir-2-o25-v2  Pdu-Mir-2-o26  Pdu-Mir-2-o27  Pdu-Mir-2-o28  Pdu-Mir-2-o29  Pdu-Mir-2-o30  Pdu-Mir-2-o31  Pdu-Mir-2-o32  Pdu-Mir-2-o33  Pdu-Mir-2-o35  Pdu-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Protostomia
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000003.1: 66419295-66419351 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUUGUCUUUGUGUGUCACUUGUUUGGUGCGGUCAAAGUGGCUGAGAUAUGUUUUUGUGUUCGUAUCACAGCCCGCUUUGGUCAUAUCAAUGAGUUGUGUUGCCGCUGUAUGUUUU
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Structure
        10           20        30        40         50       
GUAUUGUCUUUGUGUGUC---|  UG  U    C GU        -   A      UUUU 
                     ACU  UU GGUG G  CAAAGUGG CUG GAUAUG    U
                     UGA  AA CUAU C  GUUUCGCC GAC CUAUGC    G
UUUUGUAUGUCGCCGUUGUGU^  GU  -    A UG        C   A      UUGU 
     110       100        90         80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2-o34_5p*
mirBase accessionNone
Sequence 
0- CGGUCAAAGUGGCUGAGAUAUG -22
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Mature sequence

Pdu-Mir-2-o34_3p
mirBase accessionNone
Sequence 
34- UAUCACAGCCCGCUUUGGUCAUA -57
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