MirGeneDB 3.0

MirGeneDB ID

Agr-Mir-2-P12f1

Family name MIR-2 (all species)
Seed AUCACAG
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f2  Agr-Mir-2-o85  Agr-Mir-2-o86a-v1  Agr-Mir-2-o86a-v2  Agr-Mir-2-o86b  Agr-Mir-2-o87-v1  Agr-Mir-2-o87-v2 
Orthologues Cte-Mir-2-P12  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Npo-Mir-2-P12  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) A. granulata
Node of Origin (family) Protostomia
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)
JABBOT010000002.1: 46258275-46258333 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCAGAUGUACUGCAUGUGAUGGGUAACACUGACCAAGUCUCUGUGGUUUGCUGAUUCUGAUGUCAUAUCACAGCUGCUUGGAUCAGCAUGACGUGUCACAAAUAUCUGCACAUGUGU
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Structure
        10         20        30         40        50         
UGUCAGAUGUACUGCAU-      G  AACA    -|     CU       U  CUGAUU 
                  GUGAUG GU    CUGA CCAAGU  CUGUGGU UG      \
                  CACUGU CA    GACU GGUUCG  GACACUA AC      C
UGUGUACACGUCUAUAAA      G  GUAC    A^     UC       U  UGUAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Agr-Mir-2-P12f1_5p* (predicted)

mirBase accessionNone
Sequence
0- CUGACCAAGUCUCUGUGGUUUG -22
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Mature sequence

Agr-Mir-2-P12f1_3p

mirBase accessionNone
Sequence
37- UAUCACAGCUGCUUGGAUCAGC -59
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