Mir-2-o86a-v1

MirGeneDB ID

Agr-Mir-2-o86a-v1

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

West Indian fuzzy chiton (Acanthopleura granulata )

MiRBase ID

Paralogues

Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Agr-Mir-2-o85 Agr-Mir-2-o86a-v2 Agr-Mir-2-o86b Agr-Mir-2-o87-v1 Agr-Mir-2-o87-v2

Orthologues

Gsp-Mir-2 Mom-Mir-2-o86 Ple-Mir-2

Node of Origin (locus)

A. granulata

Node of Origin (family)

Protostomia

Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)

JABBOT010000080.1: 1400008-1400066 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CACCCAAGUGAGUUCUGCUGAUACGGGGGCCCAUCAGGCCGACUGUGACAUGUGACAGUGGAAUCAUAUCACAGCCAGCUUUGAUGAGCCUUUGGUCAGAACAUACAGCUGGGUUUAGG

Get precursor sequence

Structure

        10           20        30         40        50        
CACCCAAGUGAGUUCUG---|    A       C      -  CGA      CAUGUGACA 
                    CUGAU CGGGGGC CAUCAG GC   CUGUGA         G
                    GACUG GUUUCCG GUAGUU CG   GACACU         U
GGAUUUGGGUCGACAUACAA^    -       A      U  ACC      AUACUAAGG 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

Comment

It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Agr-Mir-2-o86a-v1_5p* (predicted)

mirBase accession

None

Sequence

0- CCAUCAGGCCGACUGUGACA -20

Get sequence

Mature sequence

Agr-Mir-2-o86a-v1_3p

mirBase accession

None

Sequence

38- UCACAGCCAGCUUUGAUGAGC -59

Get sequence