MirGeneDB 3.0
MirGeneDB ID

Mom-Mir-2-o86

Family name MIR-2 (all species)
Seed AUCACAG
Species Mossy chiton (Mopalia muscosa)
MiRBase ID
Paralogues Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Mom-Mir-2-o85-v1  Mom-Mir-2-o85-v2  Mom-Mir-2-o88  Mom-Mir-2-o89 
Orthologues Agr-Mir-2-o86a-v1  Agr-Mir-2-o86a-v2  Agr-Mir-2-o86b  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Polyplacophora
Node of Origin (family) Protostomia
Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)		 JARFOD010087065.1: 2485-2543 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUAAGCAUUUUGAUGAUCUUACUUGGAGUUUCAUCAAGUGGACUGUGACAUGUUGUUGUUGUAUCAUAUCACAGCCAGCUUGAUGAGCUUCCGGGUAAACACUUCCUGUGCUGAAUAA
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Structure
        10         20        30         40        50         
UUUAAGCAUUUUGAUGAUC-          U         -|  A      C   UUGUU 
                    UUACUUGGAG UUCAUCAAG UGG CUGUGA AUG     G
                    AAUGGGCCUU GAGUAGUUC ACC GACACU UAC     U
AAUAAGUCGUGUCCUUCACA          C         G^  -      A   UAUGU 
       110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Is
Star sequence

Mom-Mir-2-o86_5p*
mirBase accessionNone
Sequence 
0- UUCAUCAAGUGGACUGUGACAUG -23
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Mature sequence

Mom-Mir-2-o86_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAGCUUGAUGAGC -59
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