MirGeneDB ID | Mom-Mir-2-o88 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Mossy chiton (Mopalia muscosa) |
MiRBase ID |
|
Paralogues |
Mom-Mir-2-P12f
Mom-Mir-2-P12g
Mom-Mir-2-P12h
Mom-Mir-2-P12i
Mom-Mir-2-P12j
Mom-Mir-2-P12k
Mom-Mir-2-o85-v1
Mom-Mir-2-o85-v2
Mom-Mir-2-o86
Mom-Mir-2-o89
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
M. mucosa
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_031763545.1_ASM3176354v1_genomic_Mom) |
JARFOD010000037.1: 52221-52280 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUGGUUGCCAUGUGGAGGAGAUGCCAGAUUCAUCACAGUGGUUUUGAUGUGUGGUUAUAAUGUUCAUAUCACAGCCAGCUUUGAUGAGUUCUGUUAGUUUCCAUUACUCUUCACUCCCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUGGUUGCCAUGUGGAG GC- - C -| U UGGUUA
GAGAU CAG AUUCAUCA AG UGGUU UGAUGUG \
CUUUG GUC UGAGUAGU UC ACCGA ACUAUAC U
UCCCUCACUUCUCAUUAC AUU U U G^ C UUGUAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mom-Mir-2-o88_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCAUCACAGUGGUUUUGAUGUG -22
Get sequence
|
Mature sequence |
Mom-Mir-2-o88_3p |
mirBase accession | None |
Sequence |
37- UAUCACAGCCAGCUUUGAUGAGU -60
Get sequence
|