MirGeneDB 3.0
MirGeneDB ID

Mom-Mir-2-o88

Family name MIR-2 (all species)
Seed AUCACAG
Species Mossy chiton (Mopalia muscosa)
MiRBase ID
Paralogues Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Mom-Mir-2-o85-v1  Mom-Mir-2-o85-v2  Mom-Mir-2-o86  Mom-Mir-2-o89 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) M. mucosa
Node of Origin (family) Protostomia
Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)		 JARFOD010000037.1: 52221-52280 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGGUUGCCAUGUGGAGGAGAUGCCAGAUUCAUCACAGUGGUUUUGAUGUGUGGUUAUAAUGUUCAUAUCACAGCCAGCUUUGAUGAGUUCUGUUAGUUUCCAUUACUCUUCACUCCCU
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Structure
        10        20          30         40        50         
GCUGGUUGCCAUGUGGAG     GC-   -        C  -|    U       UGGUUA 
                  GAGAU   CAG AUUCAUCA AG UGGUU UGAUGUG      \
                  CUUUG   GUC UGAGUAGU UC ACCGA ACUAUAC      U
UCCCUCACUUCUCAUUAC     AUU   U        U  G^    C       UUGUAA 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Is
Star sequence

Mom-Mir-2-o88_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCAUCACAGUGGUUUUGAUGUG -22
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Mature sequence

Mom-Mir-2-o88_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAGCUUUGAUGAGU -60
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