Mir-2-o85-v1

MirGeneDB ID

Mom-Mir-2-o85-v1

Family name

MIR-2 (all species)

Seed

CACAGCC

Species

Mossy chiton (Mopalia muscosa)

MiRBase ID

Paralogues

Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Mom-Mir-2-o85-v2 Mom-Mir-2-o86 Mom-Mir-2-o88 Mom-Mir-2-o89

Orthologues

Agr-Mir-2-o85 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

Polyplacophora

Node of Origin (family)

Protostomia

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010000037.1: 49292-49353 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GACCAAAAGGGUGGCUUGUGACAUUCGUGGACGUCAAUGCUGGUAUGUAGUAGCCAGCUGACAAGCUCUAUCACAGCCAGCUUUGAUGAGCCAUGCCUGUCACCUAAUCAGCUUUAAUCAGC

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Structure

        10          20        30         40        50        60
GACCAAAAGGGUGGCUU--      UU     A-|     U      A   A   GCCAGCU 
                   GUGACA  CGUGG  CGUCAA GCUGGU UGU GUA       G
                   CACUGU  GUACC  GUAGUU CGACCG ACA UAU       A
CGACUAAUUUCGACUAAUC      CC     GA^     U      -   C   CUCGAAC 
120       110       100        90        80         70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Is

Star sequence

Mom-Mir-2-o85-v1_5p* (predicted)

mirBase accession

None

Sequence

0- ACGUCAAUGCUGGUAUGUAGUA -22

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Mature sequence

Mom-Mir-2-o85-v1_3p

mirBase accession

None

Sequence

40- UCACAGCCAGCUUUGAUGAGCC -62

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