MirGeneDB 3.0

MirGeneDB ID

Mom-Mir-2-o85-v1

Family name MIR-2 (all species)
Seed CACAGCC
Species Mossy chiton (Mopalia muscosa)
MiRBase ID
Paralogues Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Mom-Mir-2-o85-v2  Mom-Mir-2-o86  Mom-Mir-2-o88  Mom-Mir-2-o89 
Orthologues Agr-Mir-2-o85  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Polyplacophora
Node of Origin (family) Protostomia
Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)
JARFOD010000037.1: 49292-49353 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACCAAAAGGGUGGCUUGUGACAUUCGUGGACGUCAAUGCUGGUAUGUAGUAGCCAGCUGACAAGCUCUAUCACAGCCAGCUUUGAUGAGCCAUGCCUGUCACCUAAUCAGCUUUAAUCAGC
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Structure
        10          20        30         40        50        60
GACCAAAAGGGUGGCUU--      UU     A-|     U      A   A   GCCAGCU 
                   GUGACA  CGUGG  CGUCAA GCUGGU UGU GUA       G
                   CACUGU  GUACC  GUAGUU CGACCG ACA UAU       A
CGACUAAUUUCGACUAAUC      CC     GA^     U      -   C   CUCGAAC 
120       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Mom-Mir-2-o85-v1_5p* (predicted)

mirBase accessionNone
Sequence
0- ACGUCAAUGCUGGUAUGUAGUA -22
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Mature sequence

Mom-Mir-2-o85-v1_3p

mirBase accessionNone
Sequence
40- UCACAGCCAGCUUUGAUGAGCC -62
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