Mir-2-o89

MirGeneDB ID

Mom-Mir-2-o89

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Mossy chiton (Mopalia muscosa)

MiRBase ID

Paralogues

Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Mom-Mir-2-o85-v1 Mom-Mir-2-o85-v2 Mom-Mir-2-o86 Mom-Mir-2-o88

Orthologues

Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

M. mucosa

Node of Origin (family)

Protostomia

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010000037.1: 52665-52722 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGUGAUCAUUCUUAUGAGUUGUCUCCCCUCAUCAAGGUGGCUGUGAUGUGUUUUUUUUCACACAUAUCACAGCCUGCUUUGAUGAGAGGCUCCAACUCCACUCAACAUGGAAGGAUU

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Structure

        10           20        30         40        50       
UUGUGAUCAUUCUUAUG---     UCU  C           -|           UUUUU 
                    AGUUG   CC CUCAUCAAGGU GGCUGUGAUGUG     U
                    UCAAC   GG GAGUAGUUUCG CCGACACUAUAC     U
UUAGGAAGGUACAACUCACC     CUC  A           U^           ACACU 
      110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Is

Star sequence

Mom-Mir-2-o89_5p* (predicted)

mirBase accession

None

Sequence

0- CAUCAAGGUGGCUGUGAUGUG -21

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Mature sequence

Mom-Mir-2-o89_3p

mirBase accession

None

Sequence

35- UAUCACAGCCUGCUUUGAUGAGA -58

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