| MirGeneDB ID | Mom-Mir-2-o89 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Mossy chiton (Mopalia muscosa) |
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| MiRBase ID |
|
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| Paralogues |
Mom-Mir-2-P12f
Mom-Mir-2-P12g
Mom-Mir-2-P12h
Mom-Mir-2-P12i
Mom-Mir-2-P12j
Mom-Mir-2-P12k
Mom-Mir-2-o85-v1
Mom-Mir-2-o85-v2
Mom-Mir-2-o86
Mom-Mir-2-o88
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
M. mucosa
|
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom) |
JARFOD010000037.1: 52665-52722 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUGUGAUCAUUCUUAUGAGUUGUCUCCCCUCAUCAAGGUGGCUGUGAUGUGUUUUUUUUCACACAUAUCACAGCCUGCUUUGAUGAGAGGCUCCAACUCCACUCAACAUGGAAGGAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGUGAUCAUUCUUAUG--- UCU C -| UUUUU
AGUUG CC CUCAUCAAGGU GGCUGUGAUGUG U
UCAAC GG GAGUAGUUUCG CCGACACUAUAC U
UUAGGAAGGUACAACUCACC CUC A U^ ACACU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Mom-Mir-2-o89_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CAUCAAGGUGGCUGUGAUGUG -21
Get sequence
|
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| Mature sequence |
Mom-Mir-2-o89_3p |
| mirBase accession | None |
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| Sequence |
35- UAUCACAGCCUGCUUUGAUGAGA -58
Get sequence
|
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