MirGeneDB 3.0
MirGeneDB ID

Agr-Mir-2-o85

Family name MIR-2 (all species)
Seed AUCACAG
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Agr-Mir-2-o86a-v1  Agr-Mir-2-o86a-v2  Agr-Mir-2-o86b  Agr-Mir-2-o87-v1  Agr-Mir-2-o87-v2 
Orthologues Gsp-Mir-2  Mom-Mir-2-o85-v1  Mom-Mir-2-o85-v2  Ple-Mir-2 
Node of Origin (locus) Polyplacophora
Node of Origin (family) Protostomia
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)		 JABBOT010000080.1: 1397135-1397194 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGAGAAGGUAGCUUGUGAACGUCGUGGACGUCAAUGCUGGCAUGUAGUAGCCGGCUCGUUAGCUCUAUCACAGCCAGCUUUGAUGAGCCAGGACCUUCAGUUUUCAGCUUUCAUUACA
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Structure
        10          20        30         40        50         
GCGGAGAAGGUAGCUUG--    C   G   A-|     U      A   A  AGCCGGCU 
                   UGAA GUC UGG  CGUCAA GCUGGC UGU GU        C
                   ACUU CAG ACC  GUAGUU CGACCG ACA UA        G
ACAUUACUUUCGACUUUUG    C   G   GA^     U      -   C  UCUCGAUU 
.       110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Le
Star sequence

Agr-Mir-2-o85_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUCAAUGCUGGCAUGUAGU -20
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Mature sequence

Agr-Mir-2-o85_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAGCUUUGAUGAGC -60
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