MirGeneDB 3.0
MirGeneDB ID

Agr-Mir-2-o86b

Family name MIR-2 (all species)
Seed AUCACAG
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Agr-Mir-2-o85  Agr-Mir-2-o86a-v1  Agr-Mir-2-o86a-v2  Agr-Mir-2-o87-v1  Agr-Mir-2-o87-v2 
Orthologues Gsp-Mir-2  Mom-Mir-2-o86  Ple-Mir-2 
Node of Origin (locus) A. granulata
Node of Origin (family) Protostomia
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)		 JABBOT010000002.1: 13618167-13618223 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUCAGCAGGGAAGAUGCUUCUCCAGGUGUCAUUAAGCCGACUGUGACAUGGUGUUAUUGUAUUCAUAUCACAGCCAGCUUGAUGAGAUUUGGACAGUGACAUUCAACAGACUACAC
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Structure
        10        20          30        40        50        
GUUCAGCAGGGAAGAUGCUUC--|      G         CGA      C   GUGUUA 
                       UCCAGGU UCAUUAAGC   CUGUGA AUG      \
                       AGGUUUA AGUAGUUCG   GACACU UAC      U
CACAUCAGACAACUUACAGUGAC^      G         ACC      A   UUAUGU 
     110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Agr-Mir-2-o86b_5p*
mirBase accessionNone
Sequence 
0- CAUUAAGCCGACUGUGACAUG -21
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Mature sequence

Agr-Mir-2-o86b_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCAGCUUGAUGAG -57
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