MirGeneDB 3.0
MirGeneDB ID

Agr-Mir-2-o87-v2

Family name MIR-2 (all species)
Seed AUCACAG
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Agr-Mir-2-o85  Agr-Mir-2-o86a-v1  Agr-Mir-2-o86a-v2  Agr-Mir-2-o86b  Agr-Mir-2-o87-v1 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) A. granulata
Node of Origin (family) Protostomia
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)		 JABBOT010000080.1: 1400233-1400291 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGAUUGUGCAGGACAGGAGGCGACGGUUUCAUCAAAGUGGUGGUGAUGUGUUCUCGUGGUCACAUAUCACAGCCAGCUUUGAUGAGCUCUGUCUACUCCUAUAUCAGUAUCCAGCAU
Get precursor sequence
Structure
        10         20         30         40        50        
AAUGAUUGUGCAGGACA-    GC     U-          -|   G        UUCUC 
                  GGAG  GACGG  UUCAUCAAAG UGGU GUGAUGUG     G
                  CCUC  CUGUC  GAGUAGUUUC ACCG CACUAUAC     U
UACGACCUAUGACUAUAU    AU     UC          G^   A        ACUGG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Agr-Mir-2-o87-v2_5p*
mirBase accessionNone
Sequence 
0- UCAUCAAAGUGGUGGUGAUGUG -22
Get sequence
Mature sequence

Agr-Mir-2-o87-v2_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCAGCUUUGAUGAGC -59
Get sequence