MirGeneDB 3.0
MirGeneDB ID

Agr-Mir-2-o86a-v2

Family name MIR-2 (all species)
Seed AUCACAG
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Agr-Mir-2-o85  Agr-Mir-2-o86a-v1  Agr-Mir-2-o86b  Agr-Mir-2-o87-v1  Agr-Mir-2-o87-v2 
Orthologues Gsp-Mir-2  Mom-Mir-2-o86  Ple-Mir-2 
Node of Origin (locus) A. granulata
Node of Origin (family) Protostomia
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)		 JABBOT010000080.1: 1400008-1400066 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CACCCAAGUGAGUUCUGCUGAUACGGGGGCCCAUCAGGCCGACUGUGACAUGUGACAGUGGAAUCAUAUCACAGCCAGCUUUGAUGAGCCUUUGGUCAGAACAUACAGCUGGGUUUAGG
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Structure
        10           20        30         40        50        
CACCCAAGUGAGUUCUG---|    A       C      -  CGA      C   UGACA 
                    CUGAU CGGGGGC CAUCAG GC   CUGUGA AUG     G
                    GACUG GUUUCCG GUAGUU CG   GACACU UAC     U
GGAUUUGGGUCGACAUACAA^    -       A      U  ACC      A   UAAGG 
       110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Le
Star sequence

Agr-Mir-2-o86a-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCAUCAGGCCGACUGUGACAUG -22
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Mature sequence

Agr-Mir-2-o86a-v2_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCCAGCUUUGAUGAGC -59
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