MirGeneDB ID | Mgi-Mir-2-P12 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-2-o56
Mgi-Mir-2-o57
Mgi-Mir-2-o58a
Mgi-Mir-2-o58b
Mgi-Mir-2-o59
Mgi-Mir-2-o60
Mgi-Mir-2-o61
Mgi-Mir-2-o62
|
Orthologues |
Agr-Mir-2-P12a
Agr-Mir-2-P12b
Agr-Mir-2-P12c
Agr-Mir-2-P12d
Agr-Mir-2-P12e
Agr-Mir-2-P12f1
Agr-Mir-2-P12f2
Cte-Mir-2-P12
Dgr-Mir-2-P12
Efe-Mir-2-P12f
Efe-Mir-2-P12g
Esc-Mir-2-P12
Gsp-Mir-2
Hru-Mir-2-P12
Lgi-Mir-2-P12a
Lgi-Mir-2-P12b
Lgi-Mir-2-P12c
Lgi-Mir-2-P12d
Lgi-Mir-2-P12e
Lhy-Mir-2-P12
Llo-Mir-2-P12
Mom-Mir-2-P12f
Mom-Mir-2-P12g
Mom-Mir-2-P12h
Mom-Mir-2-P12i
Mom-Mir-2-P12j
Mom-Mir-2-P12k
Npo-Mir-2-P12
Obi-Mir-2-P12
Ofu-Mir-2-P12
Ovu-Mir-2-P12
Pau-Mir-2-P12
Pdu-Mir-2-P12
Ple-Mir-2
Pve-Mir-2-P12
Rph-Mir-2-P12
War-Mir-2-P12
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Protostomia
|
Genome context (CGI_GCA_000297895.1) |
scaffold602: 445140-445196 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUGUUAUCCUGAGAUGCAGAGUUCCUGUGCUGACUAAGUGGCUGUGAUGUAUCAUUUACUUAUAUCACAGCCUGCUUGGAUCAGUACAGUGUUCUGCUUGGUCAACAGAGCCUGUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUGUUAUCCUGAGAUG--- UUC - -| UCAU
CAGAG CUGUGCUGA CUAAGU GGCUGUGAUGUA \
GUCUU GACAUGACU GGUUCG CCGACACUAUAU U
UUGUCCGAGACAACUGGUUC GU- A U^ UCAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Star sequence |
Mgi-Mir-2-P12_5p* |
mirBase accession | None |
Sequence |
0- CUGACUAAGUGGCUGUGAUGUA -22
Get sequence
|
Mature sequence |
Mgi-Mir-2-P12_3p |
mirBase accession | None |
Sequence |
33- UAUCACAGCCUGCUUGGAUCAGUA -57
Get sequence
|