MirGeneDB ID | Llo-Mir-2-P12 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Bootlace worm (Lineus longissimus) |
MiRBase ID |
|
Paralogues |
Llo-Mir-2-o114-v1
Llo-Mir-2-o114-v2
Llo-Mir-2-o115
Llo-Mir-2-o116
Llo-Mir-2-o117
Llo-Mir-2-o118
Llo-Mir-2-o119
Llo-Mir-2-o120
Llo-Mir-2-o121
|
Orthologues |
Agr-Mir-2-P12a
Agr-Mir-2-P12b
Agr-Mir-2-P12c
Agr-Mir-2-P12d
Agr-Mir-2-P12e
Agr-Mir-2-P12f1
Agr-Mir-2-P12f2
Cte-Mir-2-P12
Dgr-Mir-2-P12
Efe-Mir-2-P12f
Efe-Mir-2-P12g
Esc-Mir-2-P12
Gsp-Mir-2
Hru-Mir-2-P12
Lgi-Mir-2-P12a
Lgi-Mir-2-P12b
Lgi-Mir-2-P12c
Lgi-Mir-2-P12d
Lgi-Mir-2-P12e
Lhy-Mir-2-P12
Mgi-Mir-2-P12
Mom-Mir-2-P12f
Mom-Mir-2-P12g
Mom-Mir-2-P12h
Mom-Mir-2-P12i
Mom-Mir-2-P12j
Mom-Mir-2-P12k
Npo-Mir-2-P12
Obi-Mir-2-P12
Ofu-Mir-2-P12
Ovu-Mir-2-P12
Pau-Mir-2-P12
Pdu-Mir-2-P12
Ple-Mir-2
Pve-Mir-2-P12
Rph-Mir-2-P12
War-Mir-2-P12
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_910592395.2_tnLinLong1) |
OU343002.1: 11596059-11596116 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUCGUCAGUGAUGAGGUGGUGUCUGCCUCCGAUUCAAGUGGCUGUGAUGUGUUACAACAAGUCAUAUCACAGCCUGCUUGGAUUAGAGGCUGGUGCUAGGAGAAUUACUGGCUAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUCGUCAGUGAUGAGG-- UG U CG -| UUACA
UGG UC GCCUC AUUCAAGU GGCUGUGAUGUG \
AUC GG CGGAG UAGGUUCG CCGACACUAUAC A
GUAAUCGGUCAUUAAGAGG GU U AU U^ UGAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Llo-Mir-2-P12_5p* |
mirBase accession | None |
Sequence |
0- CGAUUCAAGUGGCUGUGAUGUG -22
Get sequence
|
Mature sequence |
Llo-Mir-2-P12_3p |
mirBase accession | None |
Sequence |
35- UAUCACAGCCUGCUUGGAUUAGA -58
Get sequence
|