| MirGeneDB ID | Llo-Mir-2-o118 |
|---|
| Family name |
MIR-2 (all species) |
|---|
| Seed |
AUCACAG |
|---|
| Species |
Bootlace worm (Lineus longissimus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Llo-Mir-2-P12
Llo-Mir-2-o114-v1
Llo-Mir-2-o114-v2
Llo-Mir-2-o115
Llo-Mir-2-o116
Llo-Mir-2-o117
Llo-Mir-2-o119
Llo-Mir-2-o120
Llo-Mir-2-o121
|
|---|
| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
|---|
| Node of Origin (locus) |
Lineidae
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_910592395.2_tnLinLong1) |
OU343000.1: 4142445-4142502 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACCCGCAUUUUGGUAGAAUCCCUGUCAAGUCCAUCACAGCGGUUGUGAUGUGCUAUAUGAAGACAUAUCACAGCCUGCUUUGAUGAGCUGGAUGGUUGGGUAAAACGUCAAUGGCAAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCCGCAUUUUGGUAGAA -- A UC C -| CUAUA
UCC CUGUC AG CAUCA AGC GGUUGUGAUGUG \
GGG GGUAG UC GUAGU UCG CCGACACUAUAC U
GAACGGUAACUGCAAAAU UU G GA U U^ AGAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Llo-Mir-2-o118_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CCAUCACAGCGGUUGUGAUGUG -22
Get sequence
|
|---|
| Mature sequence |
Llo-Mir-2-o118_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UAUCACAGCCUGCUUUGAUGAGC -58
Get sequence
|
|---|
