MirGeneDB 3.0
MirGeneDB ID

Llo-Mir-2-o114-v1

Family name MIR-2 (all species)
Seed CACAGCC
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-2-P12  Llo-Mir-2-o114-v2  Llo-Mir-2-o115  Llo-Mir-2-o116  Llo-Mir-2-o117  Llo-Mir-2-o118  Llo-Mir-2-o119  Llo-Mir-2-o120  Llo-Mir-2-o121 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Lineidae
Node of Origin (family) Protostomia
Genome context
(GCA_910592395.2_tnLinLong1)		 OU343002.1: 11598646-11598704 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUUGUCUGUCGAAGUAGCUUGUCCCUUGCUGUCAAUGCUGGACGUAGUAGACAUUCUAAUACCUAUCACAGCCAGCUUUGAUGAGCCAGGUGCAAGUCUGUUGCUGAAAAACAAGUC
Get precursor sequence
Structure
        10          20        30         40        50        
UCCUUGUCUGUCGAAGUA--     UC   U   -|    U     AC  A   GACAUU 
                    GCUUG  CCU GCU GUCAA GCUGG  GU GUA      C
                    UGAAC  GGA CGA UAGUU CGACC  CA UAU      U
CUGAACAAAAAGUCGUUGUC     GU   C   G^    U     GA  C   CCAUAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
No No No No No No
Star sequence

Llo-Mir-2-o114-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CUGUCAAUGCUGGACGUAGUA -21
Get sequence
Mature sequence

Llo-Mir-2-o114-v1_3p
mirBase accessionNone
Sequence 
37- UCACAGCCAGCUUUGAUGAGCC -59
Get sequence