MirGeneDB 3.0
MirGeneDB ID

Llo-Mir-2-o116

Family name MIR-2 (all species)
Seed AUCACAG
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-2-P12  Llo-Mir-2-o114-v1  Llo-Mir-2-o114-v2  Llo-Mir-2-o115  Llo-Mir-2-o117  Llo-Mir-2-o118  Llo-Mir-2-o119  Llo-Mir-2-o120  Llo-Mir-2-o121 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Lineidae
Node of Origin (family) Protostomia
Genome context
(GCA_910592395.2_tnLinLong1)		 OU343002.1: 11594484-11594542 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUACCAUGUGAAAUGUAGAGCAGGUUGGCCGUCAAAGUGGUUGUGAUGUGCUGUCAUAAAGUACAUAUCACAGCCAGCUUUGAUGAGCUGACAGGCUCUGAUAUGCUACAUCACAAG
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Structure
        10        20        30          40        50         
UGAUACCAUGUGAAAUGU     AG  UG  -        -|            CUGUCA 
                  AGAGC  GU  GC CGUCAAAG UGGUUGUGAUGUG      \
                  UCUCG  CA  CG GUAGUUUC ACCGACACUAUAC      U
GAACACUACAUCGUAUAG     GA  GU  A        G^            AUGAAA 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
No No No No No No
Star sequence

Llo-Mir-2-o116_5p*
mirBase accessionNone
Sequence 
0- CCGUCAAAGUGGUUGUGAUGUG -22
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Mature sequence

Llo-Mir-2-o116_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCAGCUUUGAUGAG -59
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