| MirGeneDB ID | Llo-Mir-2-o115 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Mir-2-P12
Llo-Mir-2-o114-v1
Llo-Mir-2-o114-v2
Llo-Mir-2-o116
Llo-Mir-2-o117
Llo-Mir-2-o118
Llo-Mir-2-o119
Llo-Mir-2-o120
Llo-Mir-2-o121
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343002.1: 11595818-11595877 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACGCCGCUAUUAUUGAUGCUGGACAGAGCUGUCAAAGUGGUGGUGAAAUGUUGAAAUGAGAAGCCAUAUCACAGCCAGCUUUGAUGAGCUCGGUCCUCAUUUGUUAUCCGACGAGACGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UACGCCGCUAUUAUUGAUGCU-- A - -| G A UUGAAA
GGAC GAGCU GUCAAAG UGGU GUGA AUG U
CCUG CUCGA UAGUUUC ACCG CACU UAC G
CGCAGAGCAGCCUAUUGUUUACU G G G^ A A CGAAGA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Llo-Mir-2-o115_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGUCAAAGUGGUGGUGAAAUG -21
Get sequence
|
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| Mature sequence |
Llo-Mir-2-o115_3p |
| mirBase accession | None |
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| Sequence |
37- UAUCACAGCCAGCUUUGAUGAGC -60
Get sequence
|
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